r-ggrasp

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Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

Home https://CRAN.R-project.org/package=ggrasp
Versions 1.0
License GPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-ggrasp

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-ggrasp

and update with:

conda update r-ggrasp

docker

A Docker container is available at https://quay.io/repository/biocontainers/r-ggrasp.