r-phangorn

downloads

Package contains methods for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation. Allows to compare trees, models selection and offers visualizations for trees and split networks.

Home https://github.com/KlausVigo/phangorn
Versions 2.2.0, 2.3.1, 2.4.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-phangorn

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-phangorn

and update with:

conda update r-phangorn

docker

A Docker container is available at https://quay.io/repository/biocontainers/r-phangorn.