r-plasmidprofiler

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Contains functions developed to combine the results of querying a plasmid database using short-read sequence typing with the results of a blast analysis against the query results.

Home https://CRAN.R-project.org/package=Plasmidprofiler
Versions 0.1.4, 0.1.6
License Apache License 2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-plasmidprofiler

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-plasmidprofiler

and update with:

conda update r-plasmidprofiler

docker

A Docker container is available at https://quay.io/repository/biocontainers/r-plasmidprofiler.