recipe r-sequenza

Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

Homepage

https://sequenzatools.bitbucket.io, Mailing list: https://groups.google.com/forum/#!forum/sequenza-user-group

License

GPL3 / GPL-3

Recipe

/r-sequenza/meta.yaml

Links

doi: 10.1093/annonc/mdu479

package r-sequenza

(downloads) docker_r-sequenza

Versions

3.0.0-23.0.0-13.0.0-02.1.2-22.1.2-12.1.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-sequenza

and update with:

conda update r-sequenza

or use the docker container:

docker pull quay.io/biocontainers/r-sequenza:<tag>

(see r-sequenza/tags for valid values for <tag>)