recipe r-sequenza

Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

Homepage

https://sequenzatools.bitbucket.io, Mailing list: https://groups.google.com/forum/#!forum/sequenza-user-group

License

GPL3 / GPL-3

Recipe

/r-sequenza/meta.yaml

Links

doi: 10.1093/annonc/mdu479

package r-sequenza

Versions

3.0.0-2,  3.0.0-1,  3.0.0-0,  2.1.2-2,  2.1.2-1,  2.1.2-0

Depends

• bioconductor-copynumber

• r-base >=4.0,<4.1.0a0

• r-iotools

• r-pbapply

• r-readr

• r-seqminer

• r-squash

Required By

• r-eacon

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-sequenza

and update with:

conda update r-sequenza

or use the docker container:

docker pull quay.io/biocontainers/r-sequenza:<tag>

(see r-sequenza/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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