In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. Touzet and Varre (2007) <DOI:10.1186/1748-7188-2-15>.

Home https://github.com/ge11232002/TFMPvalue
Versions 0.0.6
License GPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-tfmpvalue


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-tfmpvalue

and update with:

conda update r-tfmpvalue


A Docker container is available at https://quay.io/repository/biocontainers/r-tfmpvalue.