scanindel

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ScanIndel is a python program to detect indels (insertions and deletions) from NGS data by re-align and de novo assemble soft clipped reads.

Home https://github.com/cauyrd/ScanIndel
Versions 1.3
License GNU General Public License v3 or later (GPLv3+)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/scanindel

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install scanindel

and update with:

conda update scanindel

docker

A Docker container is available at https://quay.io/repository/biocontainers/scanindel.