recipe scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

Homepage

https://scanpy.readthedocs.io/en/latest/

Developer docs

http://github.com/theislab/scanpy

License

BSD / BSD-3

Recipe

/scanpy/meta.yaml

Links

doi: 10.1186/s13059-017-1382-0, usegalaxy-eu: scanpy_cluster_reduce_dimension

package scanpy

(downloads) docker_scanpy

Versions
1.6.0-01.5.1-01.5.0-01.4.6-01.4.4.post1-31.4.4.post1-21.4.4.post1-11.4.4.post1-01.4.4-1

1.6.0-01.5.1-01.5.0-01.4.6-01.4.4.post1-31.4.4.post1-21.4.4.post1-11.4.4.post1-01.4.4-11.4.4-01.4.3-01.4.2-01.4.1-01.4-01.3.7-01.3.6-01.3.5-01.3.4-01.3.3-01.3.2-01.3.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install scanpy

and update with:

conda update scanpy

or use the docker container:

docker pull quay.io/biocontainers/scanpy:<tag>

(see scanpy/tags for valid values for <tag>)