scanpy

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Single-Cell Analysis in Python. Scales to >1M cells.

Home https://scanpy.readthedocs.io/en/latest/
Versions 1.3.7, 1.3.6, 1.3.5, 1.3.4, 1.3.3, 1.3.2, 1.3.1
License BSD-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/scanpy
Links doi: 10.1186/s13059-017-1382-0

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install scanpy

and update with:

conda update scanpy

docker

A Docker container is available at https://quay.io/repository/biocontainers/scanpy.