-
recipe
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
- Homepage
- Developer docs
- License
BSD / BSD-3
- Recipe
- Links
doi: 10.1186/s13059-017-1382-0, usegalaxy-eu: scanpy_cluster_reduce_dimension
-
package
scanpy
¶ -
- Versions
1.6.1-0
,1.6.0-1
,1.6.0-0
,1.5.1-0
,1.5.0-0
,1.4.6-0
,1.4.4.post1-3
,1.4.4.post1-2
,1.4.4.post1-1
,1.6.1-0
,1.6.0-1
,1.6.0-0
,1.5.1-0
,1.5.0-0
,1.4.6-0
,1.4.4.post1-3
,1.4.4.post1-2
,1.4.4.post1-1
,1.4.4.post1-0
,1.4.4-1
,1.4.4-0
,1.4.3-0
,1.4.2-0
,1.4.1-0
,1.4-0
,1.3.7-0
,1.3.6-0
,1.3.5-0
,1.3.4-0
,1.3.3-0
,1.3.2-0
,1.3.1-0
- Depends
anndata
>=0.7
h5py
>=2.10.0
importlib_metadata
>=0.7
matplotlib-base
>=3.1.2
networkx
>=2.3
numba
>=0.41.0
numpy
>=1.17.0
pandas
>=0.21
python
>=3.6
scikit-learn
>=0.21.2
scipy
>=1.4
statsmodels
>=0.10.0rc2
umap-learn
>=0.3.10,<0.5
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install scanpy
and update with:
conda update scanpy
or use the docker container:
docker pull quay.io/biocontainers/scanpy:<tag>
(see scanpy/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/scanpy/README.html)