shapeit

downloads

SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data.

Home https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html
Versions 2.r837
License Free for Academic Use
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/shapeit

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install shapeit

and update with:

conda update shapeit

docker

A Docker container is available at https://quay.io/repository/biocontainers/shapeit.