recipe sortmerna

SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads.

Homepage

http://bioinfo.lifl.fr/RNA/sortmerna

License

LGPL

Recipe

/sortmerna/meta.yaml

Links

biotools: sortmerna, doi: 10.1093/bioinformatics/bts611, usegalaxy-eu: bg_sortmerna

package sortmerna

(downloads) docker_sortmerna

Versions
4.3.3-04.3.2-14.3.2-04.3.1-14.3.1-04.2.0-14.2.0-02.1b-42.1b-3

4.3.3-04.3.2-14.3.2-04.3.1-14.3.1-04.2.0-14.2.0-02.1b-42.1b-32.1b-22.1b-12.1b-02.0-42.0-32.0-22.0-12.0-0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sortmerna

and update with:

conda update sortmerna

or use the docker container:

docker pull quay.io/biocontainers/sortmerna:<tag>

(see sortmerna/tags for valid values for <tag>)