recipe stream_chromvar

Determine variation in chromatin accessibility across sets of annotations or peaks. Designed primarily for single-cell or sparse chromatin accessibility data, e.g. from scATAC-seq or sparse bulk ATAC or DNAse-seq experiments.

Homepage

http://bioconductor.org/packages/3.8/bioc/html/chromVAR.html

License

GPL-2

Recipe

/stream_chromvar/meta.yaml

Links

biotools: chromvar

package bioconductor-chromvar

(downloads) docker_bioconductor-chromvar

Versions

1.6.0-1, 1.4.1-0, 1.4.0-1, 1.4.0-0, 1.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chromvar

and update with:

conda update bioconductor-chromvar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chromvar:<tag>

(see bioconductor-chromvar/tags for valid values for <tag>)