recipe stride

The StriDe Assembler integrates string and de Bruijn graph by decomposing reads within error-prone regions, while extending paire-end read into long reads for assembly through repetitive regions.

Homepage

https://github.com/ythuang0522/StriDe

License

GPL3

Recipe

/stride/meta.yaml

package stride

(downloads) docker_stride

Versions

1.0-4, 1.0-3, 1.0-2, 1.0-1, 1.0-0

Depends libgcc-ng

>=4.9

Depends libstdcxx-ng

>=4.9

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install stride

and update with:

conda update stride

or use the docker container:

docker pull quay.io/biocontainers/stride:<tag>

(see stride/tags for valid values for <tag>)