recipe wisecondorX

WIthin-SamplE COpy Number aberration DetectOR, including sex chromosomes

Homepage

https://github.com/CenterForMedicalGeneticsGhent/wisecondorX

License

Attribution-NonCommercial-ShareAlike CC BY-NC-SA

Recipe

/wisecondorX/meta.yaml

package wisecondorx

(downloads) docker_wisecondorx

Versions

1.1.0-1, 1.1.0-0, 1.0.2-0, 1.0.1-0, 1.0.0-0, 0.2.1-0, 0.2.0-1, 0.1.0-2, 0.1.0-1, 0.1.0-0

Depends bioconductor-dnacopy

Depends futures

Depends numpy

Depends pysam

Depends python

Depends r-jsonlite

>=1.5

Depends r-png

Depends scikit-learn

Depends scipy

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install wisecondorx

and update with:

conda update wisecondorx

or use the docker container:

docker pull quay.io/biocontainers/wisecondorx:<tag>

(see wisecondorx/tags for valid values for <tag>)