recipe abricate

Mass screening of contigs for antibiotic resistance genes

Homepage:

https://github.com/tseemann/abricate

License:

GPL-2.0-only

Recipe:

/abricate/meta.yaml

Links:

biotools: ABRicate, usegalaxy-eu: abricate

package abricate

Versions:

1.0.1-1,  1.0.1-0,  1.0.0-0,  0.9.9-0,  0.9.8-0,  0.9.7-0,  0.9.3-0,  0.8.13-0,  0.8.10-0, 

1.0.1-1,  1.0.1-0,  1.0.0-0,  0.9.9-0,  0.9.8-0,  0.9.7-0,  0.9.3-0,  0.8.13-0,  0.8.10-0,  0.8.7-0,  0.8-1,  0.8-0,  0.7-2,  0.7-1,  0.7-0,  0.5-2,  0.5-1,  0.5-0,  0.4-2,  0.4-1,  0.4-0,  0.3-0,  0.2-1,  0.2-0

Depends:

• any2fasta

• blast >=2.7

• perl-bioperl >=1.7

• perl-json

• perl-list-moreutils

• perl-lwp-simple

• perl-path-tiny

• unzip

• zlib >=1.2.11,<1.3.0a0

Required By:

• pgcgap

• gifrop

• nullarbor

• flanker

• mcroni

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install abricate

and update with:

conda update abricate

or use the docker container:

docker pull quay.io/biocontainers/abricate:<tag>

(see abricate/tags for valid values for <tag>)

Download stats

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