recipe abritamr

Running AMRFinderPlus for MDU

Homepage:

https://github.com/MDU-PHL/abritamr

License:

GPL3 / GPL-3.0-only

Recipe:

/abritamr/meta.yaml

package abritamr

Versions:

1.0.13-0,  1.0.12-0,  1.0.11-0,  1.0.10-0,  1.0.9-0,  1.0.8-0,  1.0.7-1,  1.0.7-0,  1.0.6-0, 

1.0.13-0,  1.0.12-0,  1.0.11-0,  1.0.10-0,  1.0.9-0,  1.0.8-0,  1.0.7-1,  1.0.7-0,  1.0.6-0,  1.0.4-0,  1.0.3-0,  1.0.0-0,  0.2.2-0,  0.1.0-0

Depends:

• blast

• hmmer

• libcurl

• ncbi-amrfinderplus 3.10.16.*

• pandas >1.4*

• python

• xlsxwriter

Required By:

• bohra

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install abritamr

and update with:

conda update abritamr

or use the docker container:

docker pull quay.io/biocontainers/abritamr:<tag>

(see abritamr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/abritamr/README.html)