recipe abundancebin

Abundance-based tool for binning metagenomic sequences

Homepage

http://omics.informatics.indiana.edu/AbundanceBin/

License

copyright

Recipe

/abundancebin/meta.yaml

Links

doi: 10.1007/978-3-642-12683-3_35

AbundanceBin is an abundance-based tool for binning metagenomic sequences, such that the reads classified in a bin belong to species of identical or very similar abundances. AbundanceBin also gives estimations of species abundances and their genome sizes — two important characteristic parameters for a microbial community.

package abundancebin

(downloads) docker_abundancebin

Versions

1.0.1-21.0.1-11.0.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install abundancebin

and update with:

conda update abundancebin

or use the docker container:

docker pull quay.io/biocontainers/abundancebin:<tag>

(see abundancebin/tags for valid values for <tag>)