abundancebin

downloads

Abundance-based tool for binning metagenomic sequences

Home hhttp://omics.informatics.indiana.edu/AbundanceBin/
Versions 1.0.1
License copyright
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/abundancebin
Links doi: 10.1007/978-3-642-12683-3_35

AbundanceBin is an abundance-based tool for binning metagenomic sequences, such that the reads classified in a bin belong to species of identical or very similar abundances. AbundanceBin also gives estimations of species abundances and their genome sizes — two important characteristic parameters for a microbial community.

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install abundancebin

and update with:

conda update abundancebin

docker

A Docker container is available at https://quay.io/repository/biocontainers/abundancebin.