recipe admixtools

ADMIXTOOLS (Patterson et al. 2012) is a software package that supports formal tests of whether admixture occurred, and makes it possible to infer admixture proportions and dates.

Homepage:

https://github.com/DReichLab/AdmixTools

License:

Free for Academic Use

Recipe:

/admixtools/meta.yaml

Links:

biotools: AdmixTools, doi: 10.1534/genetics.112.145037

package admixtools

versions:

7.0.2-4,  7.0.2-3,  7.0.2-2,  7.0.2-1,  7.0.2-0,  7.0.1-1,  7.0.1-0,  6.0-2,  6.0-1, 

7.0.2-4,  7.0.2-3,  7.0.2-2,  7.0.2-1,  7.0.2-0,  7.0.1-1,  7.0.1-0,  6.0-2,  6.0-1,  6.0-0,  5.1-0,  5.0-0

depends gsl:

>=2.7,<2.8.0a0

depends libgcc-ng:

>=12

depends openblas:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install admixtools

and update with::

   mamba update admixtools

To create a new environment, run:

mamba create --name myenvname admixtools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/admixtools:<tag>

(see `admixtools/tags`_ for valid values for ``<tag>``)

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