-
recipe
afterqc
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data. AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair. Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq…and other Illumina 1.8 or newer formats.
- Homepage
- License
MIT / MIT
- Recipe
-
package
afterqc
¶ -
- Versions
0.9.7-3
,0.9.7-2
,0.9.7-0
,0.9.6-0
- Depends
python
>=2.7,<3.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install afterqc
and update with:
conda update afterqc
or use the docker container:
docker pull quay.io/biocontainers/afterqc:<tag>
(see afterqc/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/afterqc/README.html)