recipe agrvate

Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.

Homepage:

https://github.com/VishnuRaghuram94/AgrVATE

License:

MIT

Recipe:

/agrvate/meta.yaml

package agrvate

Versions:

1.0.2-0,  1.0.1-2,  1.0.1-1,  1.0.1-0,  1.0-0

Depends:

• blast

• file

• hmmer

• mummer

• seqkit

• snippy >=4.6.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install agrvate

and update with:

conda update agrvate

or use the docker container:

docker pull quay.io/biocontainers/agrvate:<tag>

(see agrvate/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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