recipe ale-core

ALE: Assembly Likelihood Estimator. Core C implemented scoring programs only without supplementary plotting scripts.






This package is designed to hold the core scoring functionality of ALE without the 10+ year old supplementary python plotting scripts

package ale-core

(downloads) docker_ale-core



depends libgcc-ng:


depends libzlib:


depends samtools:

depends zlib:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ale-core

and update with::

   mamba update ale-core

To create a new environment, run:

mamba create --name myenvname ale-core

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `ale-core/tags`_ for valid values for ``<tag>``)

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