recipe alevin-fry

alevin-fry is a tool for the efficient processing of single-cell data based on RAD files produced by alevin

Homepage:

https://github.com/COMBINE-lab/alevin-fry

License:

BSD 3-Clause

Recipe:

/alevin-fry/meta.yaml

package alevin-fry

(downloads) docker_alevin-fry

versions:
0.11.2-0,  0.11.1-0,  0.11.0-1,  0.11.0-0,  0.10.0-0,  0.9.0-1,  0.9.0-0,  0.8.2-0,  0.8.1-2, 

0.11.2-0,  0.11.1-0,  0.11.0-1,  0.11.0-0,  0.10.0-0,  0.9.0-1,  0.9.0-0,  0.8.2-0,  0.8.1-2,  0.8.1-1,  0.8.1-0,  0.8.0-0,  0.7.0-1,  0.7.0-0,  0.6.0-2,  0.6.0-1,  0.6.0-0,  0.5.1-0,  0.5.0-1,  0.5.0-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.0-0,  0.2.0-0,  0.1.0-1,  0.1.0-0

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install alevin-fry

and update with::

   mamba update alevin-fry

To create a new environment, run:

mamba create --name myenvname alevin-fry

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/alevin-fry:<tag>

(see `alevin-fry/tags`_ for valid values for ``<tag>``)

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