recipe alfred

BAM statistics, feature counting and feature annotation

Homepage

https://github.com/tobiasrausch/alfred

License

GPLv3

Recipe

/alfred/meta.yaml

package alfred

(downloads) docker_alfred

Versions

0.1.17-1, 0.1.17-0, 0.1.16-1, 0.1.16-0, 0.1.15-0, 0.1.13-0, 0.1.12-1, 0.1.12-0, 0.1.9-0, 0.1.8-1, 0.1.8-0, 0.1.7-2, 0.1.7-1, 0.1.7-0, 0.1.6-2, 0.1.5-4, 0.1.5-3, 0.1.5-2, 0.1.5-1, 0.1.3-4, 0.1.3-3, 0.1.3-2, 0.1.3-1, 0.1.2-4, 0.1.2-3, 0.1.2-2, 0.1.2-1

Depends boost

>=1.68.0,<1.68.1.0a0

Depends bzip2

>=1.0.6,<2.0a0

Depends htslib

>=1.9,<1.10.0a0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends nlohmann_json

Depends sdsl-lite

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install alfred

and update with:

conda update alfred

or use the docker container:

docker pull quay.io/biocontainers/alfred:<tag>

(see alfred/tags for valid values for <tag>)