recipe ampcombi

A parsing tool to convert and summarise the outputs from multiple AMP detection tools.

Homepage:

https://github.com/Darcy220606/AMPcombi

Developer docs:

https://github.com/Darcy220606/AMPcombi/tree/dev

License:

MIT / MIT

Recipe:

/ampcombi/meta.yaml

package ampcombi

versions:

0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.7-0,  0.1.6-0,  0.1.5-0,  0.1.4-0,  0.1.3-0

depends backports.tempfile:

depends biopython:

1.80

depends contextlib2:

depends diamond:

2.0.15

depends jsonschema:

depends mmseqs2:

15.6f452

depends openpyxl:

depends pandas:

1.5.2

depends parsedatetime:

depends python:

3.11

depends requests:

depends subprocess32:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ampcombi

and update with::

   mamba update ampcombi

To create a new environment, run:

mamba create --name myenvname ampcombi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ampcombi:<tag>

(see `ampcombi/tags`_ for valid values for ``<tag>``)

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