recipe anchorwave

Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication variation

Homepage:

https://github.com/baoxingsong/AnchorWave

License:

MIT

Recipe:

/anchorwave/meta.yaml

package anchorwave

versions:

1.2.3-0,  1.2.2-0,  1.2.1-2,  1.2.1-1,  1.2.1-0,  1.2.0-0,  1.1.1-0,  1.0.1-1,  1.0.1-0, 

1.2.3-0,  1.2.2-0,  1.2.1-2,  1.2.1-1,  1.2.1-0,  1.2.0-0,  1.1.1-0,  1.0.1-1,  1.0.1-0,  1.0.0-0

depends gmap:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends minimap2:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install anchorwave

and update with::

   mamba update anchorwave

To create a new environment, run:

mamba create --name myenvname anchorwave

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/anchorwave:<tag>

(see `anchorwave/tags`_ for valid values for ``<tag>``)

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