recipe angsd

ANGSD: Analysis of next generation Sequencing Data

Homepage:

http://www.popgen.dk/angsd/index.php/ANGSD

License:

GPLv3, MIT

Recipe:

/angsd/meta.yaml

Links:

biotools: angsd, doi: 10.1186/s12859-014-0356-4

package angsd

versions:

0.940-4,  0.940-3,  0.940-2,  0.940-1,  0.940-0,  0.939-1,  0.939-0,  0.937-0,  0.935-3, 

0.940-4,  0.940-3,  0.940-2,  0.940-1,  0.940-0,  0.939-1,  0.939-0,  0.937-0,  0.935-3,  0.935-2,  0.935-1,  0.935-0,  0.933-1,  0.933-0,  0.931-1,  0.931-0,  0.923-0,  0.921-2,  0.921-1,  0.921-0,  0.910-0

depends bzip2:

>=1.0.8,<2.0a0

depends htslib:

>=1.21,<1.23.0a0

depends libgcc:

>=13

depends liblzma:

>=5.6.3,<6.0a0

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends xz:

depends zlib:

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install angsd

and update with::

   mamba update angsd

To create a new environment, run:

mamba create --name myenvname angsd

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/angsd:<tag>

(see `angsd/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/angsd/README.html)