recipe anndata2ri

Convert between AnnData and SingleCellExperiment

Homepage:

https://github.com/theislab/anndata2ri

License:

GPL-3

Recipe:

/anndata2ri/meta.yaml

package anndata2ri

versions:

1.3.1-1,  1.3.1-0,  1.2-0,  1.1-0,  1.0.6-0,  1.0.5-0,  1.0.4-0,  1.0.3-0,  1.0.2-0, 

1.3.1-1,  1.3.1-0,  1.2-0,  1.1-0,  1.0.6-0,  1.0.5-0,  1.0.4-0,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0-0

depends anndata:

depends get_version:

depends python:

>=3.6

depends rpy2:

>=3.5.2

depends tzlocal:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install anndata2ri

and update with::

   mamba update anndata2ri

To create a new environment, run:

mamba create --name myenvname anndata2ri

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/anndata2ri:<tag>

(see `anndata2ri/tags`_ for valid values for ``<tag>``)

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