recipe anvio-minimal

An interactive analysis and visualization platform for omics data

Homepage

http://merenlab.org/software/anvio/index.html

Developer docs

https://github.com/merenlab/anvio

License

GPL3 / GPL-3.0-or-later

Recipe

/anvio-minimal/meta.yaml

package anvio-minimal

Versions

5.5.0-0, 5.4.0-0, 5.3.0-0, 5.2.0-1, 5.2.0-0

Depends

• bottle 0.12.13

• cherrypy >=8,<9

• colored 1.3.93

• django 2.0.8

• ete3 3.1.1

• gsl >=2.4,<2.5.0a0

• h5py >=2.8.0

• illumina-utils 2.6

• libgcc-ng >=7.3.0

• matplotlib 2.2.3

• mistune 0.8.1

• numpy

• openblas >=0.3.6,<0.3.7.0a0

• pandas >=0.23.1

• psutil 5.4.3

• pyani 0.2.7

• pysam 0.15.2

• python >=3.6,<3.7.0a0

• requests 2.20.0

• scikit-learn 0.19.2

• scipy >=0.13.3

• six 1.11.0

• snakemake-minimal 5.2.4

• statsmodels 0.9.0

• tabulate 0.8.3

Required By

• anvio

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install anvio-minimal

and update with:

conda update anvio-minimal

or use the docker container:

docker pull quay.io/biocontainers/anvio-minimal:<tag>

(see anvio-minimal/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/anvio-minimal/README.html)