recipe anvio

A platform for integrated multi-omics

Homepage

http://merenlab.org/software/anvio/

Developer docs

https://github.com/merenlab/anvio

License

GPL3 / GPL-3.0-or-later

Recipe

/anvio/meta.yaml

package anvio

Versions

7-1,  7-0,  6.2-0,  6.1-1,  6.1-0,  6-0,  5.5.0-0,  5.4.0-0,  5.3.0-0, 

7-1,  7-0,  6.2-0,  6.1-1,  6.1-0,  6-0,  5.5.0-0,  5.4.0-0,  5.3.0-0,  5.2.0-0,  5.1.0-1,  5.0.0-1,  4.0.0-2,  4.0.0-1,  4.0.0-0,  3.0.0-1,  3.0.0-0,  2.4.0-2,  2.4.0-1,  2.4.0-0,  2.3.2-0,  2.1.0-0

Depends

• anvio-minimal 7

• bioconductor-qvalue

• blast

• bowtie2

• bwa

• centrifuge

• diamond

• fastani

• fasttree

• hmmer

• iqtree

• mcl

• megahit

• muscle

• prodigal

• r-base

• r-magrittr

• r-optparse

• r-stringi

• r-tidyverse

• samtools

• spades

• trimal

• trnascan-se

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install anvio

and update with:

conda update anvio

or use the docker container:

docker pull quay.io/biocontainers/anvio:<tag>

(see anvio/tags for valid values for <tag>)

Download stats

Link to this page

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