recipe anvio

An interactive analysis and visualization platform for omics data

Homepage

http://merenlab.org/software/anvio/index.html

Developer docs

https://github.com/merenlab/anvio

License

GPL3 / GPL-3.0-or-later

Recipe

/anvio/meta.yaml

package anvio

Versions

5.4.0-0, 5.3.0-0, 5.2.0-0, 5.1.0-1, 5.0.0-1, 4.0.0-2, 4.0.0-1, 4.0.0-0, 3.0.0-1, 3.0.0-0, 2.4.0-2, 2.4.0-1, 2.4.0-0, 2.3.2-0, 2.1.0-0

Depends

• anvio-minimal 5.4.0

• blast

• bowtie2

• bwa

• centrifuge

• diamond

• hmmer

• iqtree

• mcl

• megahit

• muscle

• prodigal

• samtools

• trimal

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install anvio

and update with:

conda update anvio

or use the docker container:

docker pull quay.io/biocontainers/anvio:<tag>

(see anvio/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/anvio/README.html)