recipe aoptk

Tools to support data mining for the development of (q)AOPs

Homepage:

https://github.com/rdurnik/aoptk

License:

MIT

Recipe:

/aoptk/meta.yaml

package aoptk

versions:

0.1.5-0,  0.1.4-0

depends beautifulsoup4:

depends biopython:

depends click:

>=8.1

depends huggingface_hub:

>=0.1.0,<1.0

depends metapub:

depends openpyxl:

depends pandas:

depends pymupdf:

depends python:

depends pytorch:

depends requests:

depends scispacy:

depends spacy:

>=3.0.0,<3.8.0

depends spacy-transformers:

depends transformers:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install aoptk

and update with::

   mamba update aoptk

To create a new environment, run:

mamba create --name myenvname aoptk

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/aoptk:<tag>

(see `aoptk/tags`_ for valid values for ``<tag>``)

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Link to this page

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