recipe apscale

Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data

Homepage:

https://github.com/DominikBuchner/apscale

License:

MIT

Recipe:

/apscale/meta.yaml

package apscale

Versions:

1.6.3-0,  1.5.5-0

Depends:

• biopython >=1.78

• cutadapt >=3.5

• demultiplexer >=1.1.0

• fastparquet >=0.8.0

• joblib >=1.0.0

• openpyxl >=3.0.6

• pandas >=1.2.1

• psutil >=5.8.0

• pyarrow >=7.0.0

• python >=3.7

• tqdm >=4.56.0

• vsearch >=2.21,<3

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install apscale

and update with:

conda update apscale

or use the docker container:

docker pull quay.io/biocontainers/apscale:<tag>

(see apscale/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/apscale/README.html)