recipe apt-probeset-summarize

From Affymetrix Power Tools package. apt-probeset-summarize is program for analyzing expression arrays including 3' IVT and exon arrays. Supports background correction (MAS5,RMA), normalization (linear scaling, quantile, sketch), and summarization (PLIER, RMA, MAS5) methods.

Homepage:

https://downloads.thermofisher.com

License:

GNU GENERAL PUBLIC LICENSE Version 2

Recipe:

/apt-probeset-summarize/meta.yaml

package apt-probeset-summarize

versions:

2.10.0-5,  2.10.0-4,  2.10.0-3,  2.10.0-2,  2.10.0-1,  2.10.0-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install apt-probeset-summarize

and update with::

   mamba update apt-probeset-summarize

To create a new environment, run:

mamba create --name myenvname apt-probeset-summarize

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/apt-probeset-summarize:<tag>

(see `apt-probeset-summarize/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/apt-probeset-summarize/README.html)