recipe aquila_stlfr

Diploid assembly and variants calling for stLFR and hybrid assembler for both linked-reads.

Homepage

https://github.com/maiziex/Aquila_stLFR

License

MIT

Recipe

/aquila_stlfr/meta.yaml

package aquila_stlfr

Versions

1.2.11-0,  1.2.10-0,  1.2.9-0,  1.2.8-0,  1.2.4-0,  1.2.1-0,  1.1-2,  1.1-0

Depends

• minimap2

• numpy

• pysam

• python >=3

• samtools

• scipy

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install aquila_stlfr

and update with:

conda update aquila_stlfr

or use the docker container:

docker pull quay.io/biocontainers/aquila_stlfr:<tag>

(see aquila_stlfr/tags for valid values for <tag>)

Download stats

Link to this page

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