recipe arb-bio

ARB 6 Sequence Analysis Suite

Homepage:

http://www.arb-home.de

Documentation:

http://www.arb-home.de/documentation.html

Developer docs:

http://bugs.arb-home.de/

License:

ARB

Recipe:

/arb-bio/meta.yaml

Links:

biotools: arb, doi: 10.1002/9781118010518.ch46

"ARB (ARBor, Latin: tree): A software environment for maintaining databases of molecular sequences and additional information, and for analyzing the sequence data, with emphasis on phylogeny reconstruction.

The programs have primarily been developed for ribosomal ribonucleic acid (rRNA) sequences and, therefore, contain special tools for alignment and analysis of these structures. However, other molecular sequence data can also be handled. Protein gene sequences and predicted protein primary structures as well as protein secondary structures can be stored in the same database.

The ARB package is designed for graphical user interface. Program control and data display are available in a hierarchical set of windows and subwindows. The majority of operations can be controlled using the mouse for moving the pointer and the left mouse button for initiating and performing operations"

package arb-bio

Versions:

6.0.6-8,  6.0.6-7,  6.0.6-6,  6.0.6-5,  6.0.6-4,  6.0.6-3,  6.0.6-1,  6.0.6-0

Depends:

• arb-bio-tools 6.0.6 haa8b8d8_8

• fasttree

• fig2dev

• gettext >=0.19.8.1,<1.0a0

• glib >=2.58.2,<3.0a0

• gnuplot

• libgcc-ng >=7.3.0

• libpng >=1.6.35,<1.7.0a0

• libstdcxx-ng >=7.3.0

• libtiff >=4.0.9,<5.0a0

• libxslt >=1.1.32,<2.0a0

• mafft

• mrbayes

• muscle

• openmotif

• perl >=5.26.2,<5.26.3.0a0

• phylip

• phyml 3.2.0.*

• raxml

• sed >=4.4

• xerces-c >=3.2.2,<3.2.3.0a0

• xfig

• xorg-libxaw

• xorg-libxft

• xorg-libxi

• xorg-libxmu

• xorg-libxp

• xorg-libxpm

• xorg-libxt

Required By:

• arb-bio-devel

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install arb-bio

and update with:

conda update arb-bio

or use the docker container:

docker pull quay.io/biocontainers/arb-bio:<tag>

(see arb-bio/tags for valid values for <tag>)

package arb-bio-devel

Versions:

6.0.6-8,  6.0.6-7,  6.0.6-6,  6.0.6-5,  6.0.6-4,  6.0.6-3

Depends:

• arb-bio 6.0.6 pl526h7ded70a_8

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• openmotif-dev

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install arb-bio-devel

and update with:

conda update arb-bio-devel

or use the docker container:

docker pull quay.io/biocontainers/arb-bio-devel:<tag>

(see arb-bio-devel/tags for valid values for <tag>)

package arb-bio-tools

Versions:

6.0.6-8,  6.0.6-7,  6.0.6-6,  6.0.6-5,  6.0.6-4,  6.0.6-3

Depends:

• glib >=2.58.2,<3.0a0

• libarbdb 6.0.6 haa8b8d8_8

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

Required By:

• arb-bio

• sina

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install arb-bio-tools

and update with:

conda update arb-bio-tools

or use the docker container:

docker pull quay.io/biocontainers/arb-bio-tools:<tag>

(see arb-bio-tools/tags for valid values for <tag>)

package libarbdb

Versions:

6.0.6-8,  6.0.6-7,  6.0.6-6,  6.0.6-5,  6.0.6-4,  6.0.6-3

Depends:

• gettext

• glib >=2.58.2,<3.0a0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

Required By:

• arb-bio-tools

• sina

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install libarbdb

and update with:

conda update libarbdb

or use the docker container:

docker pull quay.io/biocontainers/libarbdb:<tag>

(see libarbdb/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/arb-bio/README.html)