- recipe ariba
ARIBA: Antibiotic Resistance Identification By Assembly
- Homepage
- License
GPL / GNU General Public License v3 (GPL-3.0)
- Recipe
- package ariba¶
-
- Versions
2.14.6-3
,2.14.6-2
,2.14.6-0
,2.14.5-2
,2.14.5-1
,2.14.5-0
,2.14.4-0
,2.14.3-1
,2.14.3-0
,2.14.6-3
,2.14.6-2
,2.14.6-0
,2.14.5-2
,2.14.5-1
,2.14.5-0
,2.14.4-0
,2.14.3-1
,2.14.3-0
,2.14.1-0
,2.13.5-0
,2.13.3-0
,2.13.2-0
,2.12.1-0
,2.12.0-2
,2.12.0-0
,2.11.1-0
,2.11.0-0
,2.10.1-0
,2.10.0-0
,2.5.1-0
,0.6.0-0
- Depends
bcftools
>=1.2
beautifulsoup4
>=4.1.0
bowtie2
<2.4.0
cd-hit
>=4.6.5
dendropy
>=4.2.0
libgcc-ng
>=10.3.0
libstdcxx-ng
>=10.3.0
matplotlib-base
>=3.1.0
mummer
>=3.23
pyfastaq
>=3.12.0
pymummer
<=0.10.3
pysam
>=0.15.3
python
>=3.6,<3.7.0a0
python_abi
3.6.* *_cp36m
samtools
>=1.2
spades
>=3.5.0
zlib
>=1.2.11,<1.3.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install ariba
and update with:
conda update ariba
or use the docker container:
docker pull quay.io/biocontainers/ariba:<tag>
(see ariba/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/ariba/README.html)