- recipe ariba
ARIBA: Antibiotic Resistance Identification By Assembly
- Homepage:
- License:
GPL / GNU General Public License v3 (GPL-3.0)
- Recipe:
- package ariba¶
-
- Versions:
2.14.6-5
,2.14.6-4
,2.14.6-3
,2.14.6-2
,2.14.6-0
,2.14.5-2
,2.14.5-1
,2.14.5-0
,2.14.4-0
,2.14.6-5
,2.14.6-4
,2.14.6-3
,2.14.6-2
,2.14.6-0
,2.14.5-2
,2.14.5-1
,2.14.5-0
,2.14.4-0
,2.14.3-1
,2.14.3-0
,2.14.1-0
,2.13.5-0
,2.13.3-0
,2.13.2-0
,2.12.1-0
,2.12.0-2
,2.12.0-0
,2.11.1-0
,2.11.0-0
,2.10.1-0
,2.10.0-0
,2.5.1-0
,0.6.0-0
- Depends:
bcftools
>=1.2,<=1.14
beautifulsoup4
>=4.1.0
bowtie2
<2.4.0
cd-hit
>=4.6.5
dendropy
>=4.2.0
libgcc-ng
>=12
libstdcxx-ng
>=12
libzlib
>=1.2.13,<1.3.0a0
matplotlib-base
>=3.1.0
mummer
>=3.23
pyfastaq
>=3.12.0
pymummer
>=0.11.0
pysam
>=0.15.3,<=0.18.0
python
>=3.8,<3.9.0a0
python_abi
3.8.* *_cp38
samtools
>=1.2
spades
>=3.5.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install ariba
and update with:
conda update ariba
or use the docker container:
docker pull quay.io/biocontainers/ariba:<tag>
(see ariba/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/ariba/README.html)