recipe ariba

ARIBA: Antibiotic Resistance Identification By Assembly

Homepage

https://github.com/sanger-pathogens/ariba

License

GPL / GNU General Public License v3 (GPL-3.0)

Recipe

/ariba/meta.yaml

package ariba

Versions

2.14.6-3,  2.14.6-2,  2.14.6-0,  2.14.5-2,  2.14.5-1,  2.14.5-0,  2.14.4-0,  2.14.3-1,  2.14.3-0, 

2.14.6-3,  2.14.6-2,  2.14.6-0,  2.14.5-2,  2.14.5-1,  2.14.5-0,  2.14.4-0,  2.14.3-1,  2.14.3-0,  2.14.1-0,  2.13.5-0,  2.13.3-0,  2.13.2-0,  2.12.1-0,  2.12.0-2,  2.12.0-0,  2.11.1-0,  2.11.0-0,  2.10.1-0,  2.10.0-0,  2.5.1-0,  0.6.0-0

Depends

• bcftools >=1.2

• beautifulsoup4 >=4.1.0

• biopython

• bowtie2 <2.4.0

• cd-hit >=4.6.5

• dendropy >=4.2.0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• matplotlib-base >=3.1.0

• mummer >=3.23

• pyfastaq >=3.12.0

• pymummer <=0.10.3

• pysam >=0.15.3

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• samtools >=1.2

• spades >=3.5.0

• wget

• zlib >=1.2.11,<1.3.0a0

Required By

• seroba

• bactopia

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ariba

and update with:

conda update ariba

or use the docker container:

docker pull quay.io/biocontainers/ariba:<tag>

(see ariba/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ariba/README.html)