recipe arvados-cwl-runner

Arvados Common Workflow Language runner

Homepage

https://github.com/curoverse/arvados/tree/master/sdk/cwl

License

Apache 2.0

Recipe

/arvados-cwl-runner/meta.yaml

package arvados-cwl-runner

Versions

1.4.2-0, 1.4.1-0, 1.4.0-0, 1.3.3.20190419203205-0, 1.3.2.20190419203205-0, 1.3.1.20190419203205-0, 1.3.1.20190301150258-0, 1.3.0.20190221150417-0, 1.3.0.20190206223817-0, 1.3.0.20181218191458-0, 1.0.20180216164101-1, 1.0.20180216164101-0, 1.0.20171211211613-0, 1.0.20171010180436-1, 1.0.20171010180436-0, 1.0.20170914161842-0, 1.0.20170414202629-0, 1.0.20170327202303-0, 1.0.20170216151734-0, 1.0.20161230191227-0, 1.0.20161123235904-0, 1.0.20161031135838-0, 1.0.20160715171107-0, 1.0.20160502202716-0, 1.0.20160421150319-0, 1.0.20160411202258-0, 1.0.20160406195023-0, 1.0.20160401183214-0, 1.0.20160318143738-0, 1.0.20160314171956-0, 1.0.20160311144647-0, 1.0.20160323-0

Depends

• arvados-python-client >=1.3.1.20190301150258

• cwltool >=1.0.20181217162649

• python

• ruamel.yaml >=0.15.54

• schema-salad >=3.0.20181129082112

Required By

• bcbio-nextgen-vm

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install arvados-cwl-runner

and update with:

conda update arvados-cwl-runner

or use the docker container:

docker pull quay.io/biocontainers/arvados-cwl-runner:<tag>

(see arvados-cwl-runner/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/arvados-cwl-runner/README.html)