recipe asqcan

A combined pipeline for bacterial genome assembly, quality control and annotation

Homepage:

https://github.com/bogemad/asqcan

License:

GPL / GPLv3

Recipe:

/asqcan/meta.yaml

package asqcan

Versions:

0.2-2,  0.2-1,  0.2-0,  0.1-0

Depends:

• blast

• blobtools

• fastqc

• parallel

• prokka

• python <3

• quast

• spades

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install asqcan

and update with:

conda update asqcan

or use the docker container:

docker pull quay.io/biocontainers/asqcan:<tag>

(see asqcan/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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