recipe assemblytics

analyze a genome assembly by comparing it to a reference genome

Homepage

http://assemblytics.com/

License

MIT

Recipe

/assemblytics/meta.yaml

Assemblytics detects and analyzes variants from a de novo genome assembly aligned to a reference genome. It incorporates a unique anchor filtering approach to increase robustness to repetitive elements and identifies six classes of variants based on their distinct alignment signatures. Assemblytics can be applied both to comparing aberrant genomes, such as human cancers, to a reference, or to identify differences between related species.

package assemblytics

Versions

1.2.1-0,  1.2-0,  1.1-0

Depends

• mummer

• numpy

• python

• r-base

• r-ggplot2

• r-plyr

• r-rcolorbrewer

• r-scales

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install assemblytics

and update with:

conda update assemblytics

or use the docker container:

docker pull quay.io/biocontainers/assemblytics:<tag>

(see assemblytics/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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