astalavista

downloads

AStalavista is a computer program to extract alternative splicing (AS) events from a given genomic annotation of exon-intron gene coordinates. By comparing all given transcripts, AStalavista detects the variations in their splicing structure and identify all AS events (like exon skipping, alternate donor, etc) by assigning to each of them an AS code.

Home http://sammeth.net/confluence/display/ASTA/Home
Versions 3.2
License BSD
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/astalavista

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install astalavista

and update with:

conda update astalavista

docker

A Docker container is available at https://quay.io/repository/biocontainers/astalavista.