recipe ataqv

ataqv is a toolkit for measuring and comparing ATAC-seq results. It was written to help understand how well ATAC-seq assays have worked, and to make it easier to spot differences that might be caused by library prep or sequencing.

Homepage:

https://parkerlab.github.io/ataqv/

Documentation:

https://github.com/ParkerLab/ataqv/blob/master/README.rst

Developer docs:

https://github.com/ParkerLab/ataqv

License:

GPL3

Recipe:

/ataqv/meta.yaml

package ataqv

Versions:

1.3.1-2,  1.3.1-1,  1.3.1-0,  1.3.0-4,  1.3.0-3,  1.3.0-2,  1.3.0-1,  1.3.0-0,  1.2.1-2, 

1.3.1-2,  1.3.1-1,  1.3.1-0,  1.3.0-4,  1.3.0-3,  1.3.0-2,  1.3.0-1,  1.3.0-0,  1.2.1-2,  1.2.1-1,  1.2.1-0,  1.1.1-2,  1.1.1-1,  1.1.1-0,  1.0.0-1,  1.0.0-0

Depends:

• boost-cpp >=1.78.0,<1.78.1.0a0

• coreutils

• htslib >=1.17,<1.18.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• ncurses >=6.3,<7.0a0

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• zlib

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ataqv

and update with:

conda update ataqv

or use the docker container:

docker pull quay.io/biocontainers/ataqv:<tag>

(see ataqv/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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