recipe atlas-metadata-validator

A MAGE-TAB validator for Expression Atlas and Single Cell Expression Atlas

Homepage

https://github.com/ebi-gene-expression-group/atlas-metadata-validator

License

APACHE / Apache Software

Recipe

/atlas-metadata-validator/meta.yaml

This is a python module to parse a set of MAGE-TAB files and check for compatibility with the Expression Atlas and Single Cell Expression Atlas analysis pipelines. The main validation script automatically detects the experiment type from the MAGE-TAB and runs the respective tests. Currently general checks (for bulk and single-cell experiment) as well as Single Cell Expression Atlas specific checks are supported.

package atlas-metadata-validator

(downloads) docker_atlas-metadata-validator

Versions

1.4.0-0,  1.3.0-0,  1.2.1-0,  1.2.0-0,  1.1.0-0,  1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install atlas-metadata-validator

and update with:

conda update atlas-metadata-validator

or use the docker container:

docker pull quay.io/biocontainers/atlas-metadata-validator:<tag>

(see atlas-metadata-validator/tags for valid values for <tag>)

Link to this page

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