- recipe atlas-metadata-validator
A MAGE-TAB validator for Expression Atlas and Single Cell Expression Atlas
- Homepage:
https://github.com/ebi-gene-expression-group/atlas-metadata-validator
- License:
APACHE / Apache Software
- Recipe:
This is a python module to parse a set of MAGE-TAB files and check for compatibility with the Expression Atlas and Single Cell Expression Atlas analysis pipelines. The main validation script automatically detects the experiment type from the MAGE-TAB and runs the respective tests. Currently general checks (for bulk and single-cell experiment) as well as Single Cell Expression Atlas specific checks are supported.
- package atlas-metadata-validator¶
-
- Versions:
1.6.1-0
,1.6.0-0
,1.5.0-0
,1.4.1-0
,1.4.0-0
,1.3.0-0
,1.2.1-0
,1.2.0-0
,1.1.0-0
,1.6.1-0
,1.6.0-0
,1.5.0-0
,1.4.1-0
,1.4.0-0
,1.3.0-0
,1.2.1-0
,1.2.0-0
,1.1.0-0
,1.0.0-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install atlas-metadata-validator
and update with:
conda update atlas-metadata-validator
or use the docker container:
docker pull quay.io/biocontainers/atlas-metadata-validator:<tag>
(see atlas-metadata-validator/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/atlas-metadata-validator/README.html)