recipe atlas

ATLAS, a suite of methods to accurately genotype and estimate genetic diversity






package atlas

(downloads) docker_atlas



depends armadillo:


depends libblas:


depends libgcc-ng:


depends libstdcxx-ng:


depends libzlib:


depends zlib:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install atlas

and update with::

   mamba update atlas

To create a new environment, run:

mamba create --name myenvname atlas

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `atlas/tags`_ for valid values for ``<tag>``)

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