recipe atol-genome-launcher

Utility code for AToL's Genome Engine. This package provides modules for launching assemblies and annotations based on metadata ingested by the atol-bpa-datamapper.

Homepage:

https://github.com/TomHarrop/atol-genome-launcher

License:

GPL3 / GPL-3.0-or-later

Recipe:

/atol-genome-launcher/meta.yaml

package atol-genome-launcher

versions:

0.1.5-0

depends pandas:

>=2.3.3,<3

depends python:

>=3.12,<3.13

depends snakemake:

>=9.11.6,<10

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install atol-genome-launcher

and update with::

   mamba update atol-genome-launcher

To create a new environment, run:

mamba create --name myenvname atol-genome-launcher

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/atol-genome-launcher:<tag>

(see `atol-genome-launcher/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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