recipe atropos

trim adapters from high-throughput sequencing reads



CC0 and partly MIT



package atropos

(downloads) docker_atropos



depends jinja2:

depends libgcc-ng:


depends pysam:

depends python:


depends python_abi:

3.10.* *_cp310

depends tqdm:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install atropos

and update with::

   mamba update atropos

To create a new environment, run:

mamba create --name myenvname atropos

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `atropos/tags`_ for valid values for ``<tag>``)

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