augustus

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AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments.

Home http://bioinf.uni-greifswald.de/augustus/
Versions 3.1, 3.2.2, 3.2.3
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/augustus

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install augustus

and update with:

conda update augustus

docker

A Docker container is available at https://quay.io/repository/biocontainers/augustus.