-
recipe
augustus
AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments.
- Homepage
- License
Other / Artistic Licence
- Recipe
- Links
biotools: augustus, doi: 10.1093/bioinformatics/btr010, usegalaxy-eu: augustus
-
package
augustus
¶ -
- Versions
3.4.0-0
,3.3.3-5
,3.3.3-4
,3.3.3-3
,3.3.3-2
,3.3.3-1
,3.3.3-0
,3.3.2-2
,3.3.2-1
,3.4.0-0
,3.3.3-5
,3.3.3-4
,3.3.3-3
,3.3.3-2
,3.3.3-1
,3.3.3-0
,3.3.2-2
,3.3.2-1
,3.3.2-0
,3.3-5
,3.3-4
,3.3-2
,3.3-1
,3.3-0
,3.2.3-5
,3.2.3-4
,3.2.3-3
,3.2.3-2
,3.2.3-1
,3.2.3-0
,3.2.2-3
,3.2.2-2
,3.2.2-1
,3.2.2-0
,3.1-0
- Depends
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install augustus
and update with:
conda update augustus
or use the docker container:
docker pull quay.io/biocontainers/augustus:<tag>
(see augustus/tags for valid values for
<tag>
)
Notes¶
Builds with sqlite support are currently only available on Linux due to compile issues with macOS.
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/augustus/README.html)