- recipe augustus
AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments.
- Homepage:
- License:
Other / Artistic Licence
- Recipe:
- Links:
biotools: augustus, doi: 10.1093/bioinformatics/btr010, usegalaxy-eu: augustus
- package augustus¶
-
- Versions:
3.5.0-2
,3.5.0-1
,3.5.0-0
,3.4.0-8
,3.4.0-7
,3.4.0-6
,3.4.0-5
,3.4.0-4
,3.4.0-3
,3.5.0-2
,3.5.0-1
,3.5.0-0
,3.4.0-8
,3.4.0-7
,3.4.0-6
,3.4.0-5
,3.4.0-4
,3.4.0-3
,3.4.0-2
,3.4.0-1
,3.4.0-0
,3.3.3-11
,3.3.3-10
,3.3.3-9
,3.3.3-8
,3.3.3-7
,3.3.3-6
,3.3.3-5
,3.3.3-4
,3.3.3-3
,3.3.3-2
,3.3.3-1
,3.3.3-0
,3.3.2-2
,3.3.2-1
,3.3.2-0
,3.3-5
,3.3-4
,3.3-2
,3.3-1
,3.3-0
,3.2.3-5
,3.2.3-4
,3.2.3-3
,3.2.3-2
,3.2.3-1
,3.2.3-0
,3.2.2-3
,3.2.2-2
,3.2.2-1
,3.2.2-0
,3.1-0
- Depends:
bamtools
>=2.5.1,<2.5.2.0a0
boost-cpp
>=1.74.0,<1.74.1.0a0
gsl
>=2.7,<2.8.0a0
htslib
>=1.17,<1.18.0a0
libblas
>=3.9.0,<4.0a0
libcblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
libsqlite
>=3.40.0,<4.0a0
libstdcxx-ng
>=12
libzlib
>=1.2.13,<1.3.0a0
perl
>=5.32.1,<5.33.0a0 *_perl5
perl-module-build
0.4232.*
perl-yaml
sqlite
>=3.40.0,<4.0a0
suitesparse
>=5.10.1,<6.0a0
zlib
>=1.2.13,<1.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install augustus
and update with:
conda update augustus
or use the docker container:
docker pull quay.io/biocontainers/augustus:<tag>
(see augustus/tags for valid values for
<tag>
)
Notes¶
Builds with sqlite support are currently only available on Linux due to compile issues with macOS.
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/augustus/README.html)