recipe aviary

End-to-end metagenomics hybrid assembly and binning pipeline.

Homepage:

https://github.com/rhysnewell/aviary/

Documentation:

https://rhysnewell.github.io/aviary/

License:

GPL3

Recipe:

/aviary/meta.yaml

Aviary is an easy to use hybrid assembler and metagenomic pipeline

For more details see documentation: https://rhysnewell.github.io/aviary/.

package aviary

Versions:

0.5.7-0,  0.5.4-0,  0.5.0-0,  0.4.3-0,  0.4.1-0

Depends:

• bbmap

• biopython

• mamba >=0.8.2

• numpy

• pandas >=1.2

• parallel

• pigz >=2.6

• python >=3.8,<3.11

• ruamel.yaml >=0.15.99

• snakemake >=6.0.6

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install aviary

and update with:

conda update aviary

or use the docker container:

docker pull quay.io/biocontainers/aviary:<tag>

(see aviary/tags for valid values for <tag>)

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Link to this page

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