Package Recipe 'bactopia-variants'

recipe bactopia-variants

Methods used by Bactopia for SNP and InDel analysis

Homepage:: https://bactopia.github.io/
Developer docs:: https://github.com/bactopia/bactopia-variants/
License:: MIT
Recipe:: /bactopia-variants/meta.yaml
Links:: biotools: bactopia, doi: 10.1128/mSystems.00190-20

package bactopia-variants¶

Versions:

1.0.0-0

Depends:

coreutils
gsl 2.6.*
openjdk 11.0.15.*
pigz
python >=3.6,<3.11
rename
sed
snippy >=4.6.0
snpeff >=4.3,<5
vcf-annotator >=0.7

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bactopia-variants

and update with:

conda update bactopia-variants

or use the docker container:

docker pull quay.io/biocontainers/bactopia-variants:<tag>

(see bactopia-variants/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bactopia-variants/README.html)