recipe baczy

Bacterial toolkit

Homepage:

https://github.com/npbhavya/baczy/

Documentation:

https://github.com/npbhavya/baczy

Developer docs:

https://github.com/npbhavya/baczy

License:

MIT / MIT

Recipe:

/baczy/meta.yaml

Bacterial genome analysis workflow that identifies antibiotic resistance, defense mechanisms, virulence factors, prophages, and capsule-related genes.

package baczy

versions:

1.0.3-0

depends attrmap:

>=0.0.7

depends biopython:

>=1.8.1

depends click:

>=8.1.3

depends jinja2:

>=3.0.2

depends metasnek:

>=0.0.4

depends pandas:

depends python:

<3.12

depends pyyaml:

>=6.0

depends snakemake-minimal:

>=7.14.0

depends snaketool-utils:

>=0.0.4

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install baczy

and update with::

   mamba update baczy

To create a new environment, run:

mamba create --name myenvname baczy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/baczy:<tag>

(see `baczy/tags`_ for valid values for ``<tag>``)

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Link to this page

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