- recipe bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids.
- Homepage
- License
GPL / GPLv3
- Recipe
- Links
biotools: bakta, doi: 10.1099/mgen.0.000685, doi: 10.5281/zenodo.4247252
- package bakta¶
-
- Versions
1.4.1-0
,1.4.0-1
,1.4.0-0
,1.3.3-0
,1.3.1-0
,1.3.0-0
,1.2.4-1
,1.2.4-0
,1.2.3-0
,1.4.1-0
,1.4.0-1
,1.4.0-0
,1.3.3-0
,1.3.1-0
,1.3.0-0
,1.2.4-1
,1.2.4-0
,1.2.3-0
,1.2.2-0
,1.2.1-0
,1.2.0-0
,1.1.1-0
,1.1-0
,1.0.4-0
,1.0.3-0
,1.0.2-0
,1.0.1-0
,1.0-0
,0.5-0
,0.4-0
,0.3.2-0
,0.3.1-0
,0.3-0
- Depends
alive-progress
1.6.2
aragorn
>=1.2.38
biopython
>=1.78
blast
>=2.12.0
diamond
>=2.0.14
hmmer
>=3.3.2
infernal
>=1.1.4
ncbi-amrfinderplus
>=3.10.23
prodigal
>=2.6.3
python
>=3.8
requests
>=2.25.1
trnascan-se
>=2.0.8
xopen
>=1.1.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bakta
and update with:
conda update bakta
or use the docker container:
docker pull quay.io/biocontainers/bakta:<tag>
(see bakta/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bakta/README.html)