recipe bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids.

Homepage

https://github.com/oschwengers/bakta

License

GPL / GPLv3

Recipe

/bakta/meta.yaml

Links

biotools: bakta, doi: 10.1099/mgen.0.000685, doi: 10.5281/zenodo.4247252

package bakta

Versions

1.4.1-0,  1.4.0-1,  1.4.0-0,  1.3.3-0,  1.3.1-0,  1.3.0-0,  1.2.4-1,  1.2.4-0,  1.2.3-0, 

1.4.1-0,  1.4.0-1,  1.4.0-0,  1.3.3-0,  1.3.1-0,  1.3.0-0,  1.2.4-1,  1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.1-0,  1.1-0,  1.0.4-0,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0-0,  0.5-0,  0.4-0,  0.3.2-0,  0.3.1-0,  0.3-0

Depends

• alive-progress 1.6.2

• aragorn >=1.2.38

• biopython >=1.78

• blast >=2.12.0

• diamond >=2.0.14

• hmmer >=3.3.2

• infernal >=1.1.4

• ncbi-amrfinderplus >=3.10.23

• piler-cr

• prodigal >=2.6.3

• python >=3.8

• requests >=2.25.1

• trnascan-se >=2.0.8

• xopen >=1.1.0

Required By

• mgca

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bakta

and update with:

conda update bakta

or use the docker container:

docker pull quay.io/biocontainers/bakta:<tag>

(see bakta/tags for valid values for <tag>)

Download stats

Link to this page

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