recipe bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids.

Homepage:

https://github.com/oschwengers/bakta

License:

GPL / GPLv3

Recipe:

/bakta/meta.yaml

Links:

biotools: bakta, doi: 10.1099/mgen.0.000685, doi: 10.5281/zenodo.4247252

package bakta

Versions:

1.6.0-0,  1.5.1-0,  1.5.0-0,  1.4.2-0,  1.4.1-0,  1.4.0-1,  1.4.0-0,  1.3.3-0,  1.3.1-0, 

1.6.0-0,  1.5.1-0,  1.5.0-0,  1.4.2-0,  1.4.1-0,  1.4.0-1,  1.4.0-0,  1.3.3-0,  1.3.1-0,  1.3.0-0,  1.2.4-1,  1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.1-0,  1.1-0,  1.0.4-0,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0-0,  0.5-0,  0.4-0,  0.3.2-0,  0.3.1-0,  0.3-0

Depends:

• alive-progress 1.6.2

• aragorn >=1.2.38

• biopython >=1.78

• blast >=2.12.0

• circos >=0.69.8

• diamond >=2.0.14

• hmmer >=3.3.2

• infernal >=1.1.4

• ncbi-amrfinderplus >=3.10.42

• piler-cr

• pyrodigal >=2.0.2

• python >=3.8

• pyyaml >=6.0

• requests >=2.25.1

• trnascan-se >=2.0.8

• xopen >=1.1.0

Required By:

• mgca

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bakta

and update with:

conda update bakta

or use the docker container:

docker pull quay.io/biocontainers/bakta:<tag>

(see bakta/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bakta/README.html)