- recipe baktfold
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information
- Homepage:
- Documentation:
- License:
MIT / MIT
- Recipe:
- package baktfold¶
- versions:
0.0.3-0,0.0.2-0- depends alive-progress:
>=3.0.1- depends biopython:
>=1.76- depends click:
>=8.0.0- depends datasets:
>=2.15- depends foldseek:
10.941cd33- depends h5py:
>=3.5- depends loguru:
>=0.5.3- depends numpy:
>=1.20- depends pandas:
>=1.4.2- depends pyarrow:
>=14.0.0- depends python:
>=3.8,<4- depends pytorch:
>=2.1.2- depends pyyaml:
>=6.0- depends requests:
>=2.25- depends sentencepiece:
>=0.1.99- depends tqdm:
>=4.35.0- depends transformers:
>=4.34- depends xopen:
>=1.5.0- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install baktfold and update with:: mamba update baktfold
To create a new environment, run:
mamba create --name myenvname baktfold
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/baktfold:<tag> (see `baktfold/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
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[](http://bioconda.github.io/recipes/baktfold/README.html)
