recipe bam2fastx

Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files

Homepage

https://github.com/PacificBiosciences/bam2fastx

License

BSD-3-Clause-Clear

Recipe

/bam2fastx/meta.yaml

package bam2fastx

(downloads) docker_bam2fastx

Versions

1.3.0-7, 1.3.0-6, 1.3.0-5, 1.3.0-4, 1.3.0-3, 1.3.0-2, 1.3.0-1, 1.3.0-0

Depends

  • libgcc-ng >=7.3.0

  • libstdcxx-ng >=7.3.0

  • pbbam 0.23.0.*

  • pbcopper 0.4.2.*

  • zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bam2fastx

and update with:

conda update bam2fastx

or use the docker container:

docker pull quay.io/biocontainers/bam2fastx:<tag>

(see bam2fastx/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bam2fastx/README.html)