recipe bam2fastx

Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files

Homepage:

https://github.com/PacificBiosciences/bam2fastx

License:

BSD-3-Clause-Clear

Recipe:

/bam2fastx/meta.yaml

package bam2fastx

Versions:

1.3.1-2,  1.3.1-1,  1.3.1-0,  1.3.0-8,  1.3.0-7,  1.3.0-6,  1.3.0-5,  1.3.0-4,  1.3.0-3, 

1.3.1-2,  1.3.1-1,  1.3.1-0,  1.3.0-8,  1.3.0-7,  1.3.0-6,  1.3.0-5,  1.3.0-4,  1.3.0-3,  1.3.0-2,  1.3.0-1,  1.3.0-0

Depends:

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• pbbam >=1.6.0

• pbcopper >=1.8.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bam2fastx

and update with:

conda update bam2fastx

or use the docker container:

docker pull quay.io/biocontainers/bam2fastx:<tag>

(see bam2fastx/tags for valid values for <tag>)

Download stats

Link to this page

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