recipe bamm

Metagenomics-focused BAM file manipulation

Homepage

https://github.com/Ecogenomics/BamM

License

LGPL-3.0

Recipe

/bamm/meta.yaml

package bamm

Versions

1.7.3-10,  1.7.3-9,  1.7.3-8,  1.7.3-7,  1.7.3-6,  1.7.3-5,  1.7.3-4,  1.7.3-3,  1.7.3-2, 

1.7.3-10,  1.7.3-9,  1.7.3-8,  1.7.3-7,  1.7.3-6,  1.7.3-5,  1.7.3-4,  1.7.3-3,  1.7.3-2,  1.7.3-1,  1.7.3-0

Depends

• bwa >=0.7.12

• htslib >=1.14,<1.15.0a0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• numpy

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• samtools >=1.3.1

• zlib >=1.2.11,<1.3.0a0

Required By

• groopm

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bamm

and update with:

conda update bamm

or use the docker container:

docker pull quay.io/biocontainers/bamm:<tag>

(see bamm/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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